Unfortunately this page does not have a mobile or narrow screen view. Please switch to a desktop computer or increase the size of your browser. For tablets try flipping the screen.
Data Publication
Visualizing Cyanobacterial Biofilms in 3D Using Micro-Computed Tomography
Schröer, Laurenz
YoDa Data Repository, Utrecht University, Netherlands
(2023)
This data package contains all the reconstructed µCT scans that were analyzed and displayed in the publication from Schröer et al. titled 3D Visualization of Cyanobacterial Biofilms using Micro-Computed Tomography with Contrast-Enhancing Staining Agents. The goal of this research and this data was to visualize cyanobacterial biofilms using micro-computed tomography using five different contras-enhancing staining agents (CESAs) Every folder contains a series of .tiff files making up a 3D volume and a text file that describes either the scanning or reconstruction parameters. The µCT scans show six samples of biofilms of Phormidium autumnale ULC086 colonizing Bentheim sandstone. The biofilms were stained with (1) Isotonic Lugol, (2) Hexabrix, (3) Mono-WD POM, (4) Hf-WD 1:2 POM, (5) CA4+ or remained (6) blank as control. The data is provided in six subfolders. Detailed information about the files in these subfolders is given in the explanatory file ReadMe_3dcyano.txt. Contact person is Laurenz Schröer - laurenz.schroer@ugent.be
Keywords
Originally assigned keywords
Corresponding MSL vocabulary keywords
MSL enriched keywords
MSL enriched sub domains i
Source publisher
YoDa Data Repository, Utrecht University, Netherlands
DOI
10.24416/uu01-rifw3x
Authors
Schröer, Laurenz
0000-0003-3635-5180
PProGRess-UGCT, Department of Geology, Ghent University, Belgium; Center for Microbial Ecology and Technology (CMET), Department of Biotechnology, Ghent University, Belgium ;
Contributers
Balcaen, Tim
Researcher
0000-0001-5108-525X
Institute of Mechanics, Materials, and Civil Engineering (iMMC), UCLouvain, Belgium; Institute of Experimental and Clinical Research (IREC), UCLouvain, Belgium; Sustainable Chemistry of Molecules and Metals, Department of Chemistry, KU Leuven, Belgium ;
Folens, Karel
Researcher
0000-0002-4692-8037
Center for Microbial Ecology and Technology (CMET), Department of Biotechnology, Ghent University, Belgium ;
Boon, Nico
Supervisor
0000-0002-7734-3103
Center for Microbial Ecology and Technology (CMET), Department of Biotechnology, Ghent University, Belgium ;
De Kock, Tim
Supervisor
0000-0001-5096-1473
Antwerp Cultural Heritage Sciences (ARCHES), University of Antwerp, Belgium;
Kerckhofs, Greet
Researcher
0000-0002-1750-8324
Institute of Mechanics, Materials, and Civil Engineering (iMMC), UCLouvain, Belgium; Institute of Experimental and Clinical Research (IREC), UCLouvain, Belgium; Prometheus, Division of Skeletal Tissue Engineering, Department of Materials Engineering, KU Leuven, Belgium ;
Cnudde, Veerle
Supervisor
0000-0002-3269-5914
PProGRess-UGCT, Department of Geology, Ghent University, Belgium; Environmental hydrogeology, Department of Earth Sciences, Utrecht University, The Netherlands;
Citiation
Schröer, L. (2023). Visualizing Cyanobacterial Biofilms in 3D Using Micro-Computed Tomography (Version 1.0) [Data set]. Utrecht University. https://doi.org/10.24416/UU01-RIFW3X
Collection Period
2021-05-01 - 2023-07-04
Geo location(s)
UGent Core facility UGCT, Ghent, Belgium